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AUTODOCK GmbH tools (adt) software
Tools (Adt) Software, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tools+(adt)+software/tools++adt++software/pmc12267398-113-2-2
Average 90 stars, based on 1 article reviews
tools (adt) software - by Bioz Stars, 2026-10
90/100 stars

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Software:

Article Title: In Slico Screening and In Vitro Identification of Hyperuricemia-Inhibiting Peptides from Trachurus japonicus
Article Snippet: .. Unnecessary ligand molecules and water molecules were removed using AutoDock Tools software (ADT, 1.5.7) [ ]. ..

Article Title: Novel Insights into the Therapeutic Effect of Amentoflavone Against Aeromonas hydrophila Infection by Blocking the Activity of Aerolysin.
Article Snippet: .. Firstly, polar hydrogen atoms and Gasteiger charges were added to AMF, and then non-polar hydrogen atoms were merged by AutoDock Tools software (ADT, version 1.5.6). ..

Article Title: In Slico Screening and In Vitro Identification of Hyperuricemia-Inhibiting Peptides from Trachurus japonicus .
Article Snippet: .. Unnecessary ligand molecules and water molecules were removed using AutoDock Tools software (ADT, 1.5.7) [26]. ..

other:

Article Title: Unraveling anti-atherosclerosis mechanism of anthocyanins from Xinjiang wild cherry plum ( Prunus divaricata Ledeb) via network pharmacology and molecular docking
Article Snippet: In brief, the 3D structures of anthocyanins were downloaded from PubChem in sdf format, which then were converted into pdb format by PyMOL V 2.5.5 software and processed by AutoDock Tools (ADT) V4.2 software, following outputting as pdbqt format.

Article Title: Oxiracetam ameliorates neurological function after traumatic brain injury through competing endogenous RNA regulatory network.
Article Snippet: Traumatic brain injury (TBI) is defined as a series of pathophysiological disorders of the brain caused by blunt or sharp object injuries (Capizzi et al. 2020; Lai et al. 2022).. In the aftermath of brain injury, the brain and other organs embark on a complex series of metabolic alterations, which can either directly or indirectly affect neurological function (Lai et al. 2022).. It is estimated that more than half a million individuals worldwide experience TBI annually, with an observed increase in incidence and prevalence over the past three decades (Dams-O’Connor et al. 2023; Jiang et al. 2019).

Article Title: In vitro and in silico study and pharmacokinetic analysis of the acaricidal effectiveness of Cersium arvense extract against Rhipicephalus microplus
Article Snippet: Subsequently, the AutoDock Tools (ADT) software was employed to prepare the ligand structures, which included adjustments for nonpolar hydrogens, Gasteiger charges, and rotatable bonds.

Article Title: Triclocarban and Triclosan disturb Lipometabolism via PPAR in black-spotted frogs: In vivo and molecular dynamics simulation studies.
Article Snippet: Triclocarban (TCC) and triclosan (TCS) are broad-spectrum antimicrobial agents that are widely distributed in aquatic environments.. They pose significant risks to aquatic organisms, but their potential impacts on animal health remain poorly understood.. In this study, black-spotted frogs (Pelophylax nigromaculatus) were exposed to TCC or TCS at concentrations of 1, 10, or 100 μg/L for 21 days to investigate the effects of these agents on hepatic lipid metabolism.

Article Title: Antidiabetic Potential of Synthesized Ferrocenylmethylaniline Derivatives: Insights From In Vitro Studies, Molecular Docking, ADMET, DFT Calculations, and Molecular Dynamics Simulation.
Article Snippet: This study investigates the potential of three synthesized ferrocenylmethylaniline derivatives (FMBA, FMAA, and FMA) as inhibitors of α-amylase, a key enzyme involved in the pathophysiology of diabetes.. In vitro inhibition assays demonstrated that FMBA and FMAA exhibited significantly lower IC50 values of 9.23 and 11.23 μM, respectively, compared to 259 μM for the standard drug acarbose (ARE).Molecular docking studies supported these findings, with FMBA showing the highest binding affinity (∆G of −7.33 kcal/mol), followed by FMAA (−6.44 kcal/mol) and FMA (−5.85 kcal/mol), outperforming ARE (−4.88 kcal/mol).. ADMET analysis suggested favorable pharmacokinetic and safety profiles for FMBA and FMAA, reinforcing their potential as viable drug candidates.



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